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1.
Pediatrics ; 151(3)2023 03 01.
Artigo em Inglês | MEDLINE | ID: mdl-36815269

RESUMO

OBJECTIVES: An extended newborn critical congenital heart disease (CCHD) screening program using oximetry has been implemented in Taipei, Taiwan since April 2014. This study was conducted to investigate the test accuracy and efficiency of this screening protocol. METHODS: This study analyzed data from 30 birthing facilities representing 87.9% of live births in Taipei. Positive screening was defined as oxygen saturation <95% in either extremity or a preductal-postductal oxygen saturation difference of >3%. This study cohort was used to retrospectively estimate outcomes on the basis of different CCHD screening protocols. RESULTS: During the study period, 93 058 of 94 204 (98.8%) infants who had no prenatal suspicion were screened. The referral rate was 0.17% (156/93 058), and up to 90% of test-positive infants were referred within 48 hours of life. Forty-two CCHD cases without prenatal suspicion were detected and 97.6% were diagnosed within 72 hours of life. Of the screened newborns, 4 CCHD cases passed the screening. The false positive and false negative rates were 0.12% and 0.04%, respectively. In addition, applying our database to Spanish and updated American Academy of Pediatrics screening strategies led to more CCHD case detection. CONCLUSIONS: The Taipei protocol provided an efficient and effective screening referral system in a community setting. For optimal efficiency, we advocated the updated American Academy of Pediatrics algorithm/Spanish recommendation with a modification of immediate referral if oxygen saturation ≤90% in either extremity. The updated protocol would be practicable for nationwide screening in Taiwan and could also be applied to other regions with similar medical care systems.


Assuntos
Cardiopatias Congênitas , Triagem Neonatal , Humanos , Recém-Nascido , Criança , Triagem Neonatal/métodos , Estudos Retrospectivos , Cardiopatias Congênitas/diagnóstico , Oximetria/métodos , Algoritmos
2.
Sci Rep ; 10(1): 11374, 2020 07 09.
Artigo em Inglês | MEDLINE | ID: mdl-32647318

RESUMO

Newborns with significant neonatal jaundice (SNJ) would admit for evaluation and/or intervention due to an earlier or more rapid increase in bilirubin level. Bilirubin-induced neurological dysfunction in this population might be underestimated. We aimed to investigate the risk of long-term neurodevelopmental sequelae of SNJ in Taiwan. An SNJ 2000-2003 follow-up cohort consisting of 66,983 neonates was extracted from the nationwide, population-based health insurance database in Taiwan to survey the accumulative incidence of long-term (7-year) neurodevelopmental sequelae in comparison to a reference general-population neonate cohort of 12,579 individuals born in 2000. The SNJ follow-up cohort was furtherly categorized into subgroups according to interventions (phototherapy, intensive phototherapy, and exchange transfusion). The SNJ follow-up cohort exhibited significantly higher cumulative rates of long-term neurodevelopmental sequelae than did the reference cohort (P < 0.05). The risks of infantile cerebral palsy, hearing loss, and developmental delay in the SNJ follow-up cohort were between twice and three times of those in the reference cohort after adjusting for gender, comorbid perinatal disorders and urbanization levels. All intervention subgroups demonstrated higher risks for long-term neurodevelopmental sequelae than the reference cohort (P < 0.05) after adjustment. Patients with SNJ are at risk of developing neurodevelopmental disorders during their growth period. A scheduled follow-up protocol of physical and neurodevelopmental assessment during early childhood for these SNJ patients would potentially be helpful for the early detection of and intervention for neurodevelopmental disorders.


Assuntos
Eritroblastose Fetal/epidemiologia , Icterícia Neonatal/complicações , Transtornos do Neurodesenvolvimento/epidemiologia , Bilirrubina/sangue , Bilirrubina/toxicidade , Criança , Pré-Escolar , Eritroblastose Fetal/sangue , Feminino , Seguimentos , Humanos , Incidência , Lactente , Recém-Nascido , Icterícia Neonatal/sangue , Icterícia Neonatal/epidemiologia , Masculino , Transtornos do Neurodesenvolvimento/etiologia , Estudos Retrospectivos , Taiwan/epidemiologia
3.
Data Brief ; 25: 104129, 2019 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-31294066

RESUMO

Glucose-6-phosphate dehydrogenase deficiency (G6PD deficiency; OMIM #300908) is the most common inborn error disorders worldwide. While the G6PD is the key enzyme of removing oxidative stress in erythrocytes, the early diagnosis is utmost vital to prevent chronic and drug-, food- or infection-induced hemolytic anemia. The characterization of the mutations is also important for the subsequent genetic counseling, especially for female carrier with ambiguous enzyme activities and males with mild mutations. While multiplex SNaPshot assay and Sanger sequencing were performed on 500 G6PD deficient males, five newly discovered variations, namely c.187G > A (p.E63K), c.585G > C (p.Q195H), c.586A > T (p.I196F), c.743G > A (p.G248D), and c.1330G > A (p.V444I) were detected in the other six patients. These variants were previously named as the Pingtung, Tainan, Changhua, Chiayi, and Tainan-2 variants, respectively. The in silico analysis, as well as the prediction of the structure of the resultant mutant G6PD protein indicated that these five newly discovered variants might be disease causing mutations.

4.
Clin Chim Acta ; 495: 271-277, 2019 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-31022393

RESUMO

BACKGROUND: Patients with glucose-6-phosphate dehydrogenase deficiency might develop acute hemolytic anemia, chronic hemolytic anemia, and neonatal hyperbilirubinemia when exposed to high levels of oxidative stress. Severe hemolysis may occur in not only patients but also female carriers under certain conditions. However, 80%-85% of female carriers were undetected in an existing newborn screening program because of their wide-ranging levels of enzyme activity. METHODS: We developed a cost- and time-efficient multiplex SNaPshot assay using dried blood spots. RESULTS: By detecting 21 common mutations in Taiwan and Southeast Asia, the assay could determine 98.2% of the mutant alleles in our cohort of Taiwanese newborns. The 9 undetermined mutant alleles were consequently detected by Sanger sequencing, of which 5 unpublished variations-c.187G > A (Pingtung), c.585G > C (Tainan), c.586A > T (Changhua), c.743G > A (Chiayi), and c.1330G > A (Tainan-2)-were detected. Furthermore, 13% of mild mutations were missed in male infants whose enzyme levels at 6.1-7.0 U/gHb in the newborn screening program when set the cutoff value at 6.0 U/gHb. We therefore suggest increasing the cutoff value and applying the multiplex SNaPshot assay as the second tier for neonatal screening. CONCLUSIONS: Our approach could significantly increase the detection rate of male patients and female carriers with a reasonable cost and a reasonable number of clinic referrals.


Assuntos
Primers do DNA/genética , Teste em Amostras de Sangue Seco/métodos , Deficiência de Glucosefosfato Desidrogenase/sangue , Deficiência de Glucosefosfato Desidrogenase/diagnóstico , Triagem Neonatal/métodos , Sequência de Bases , Estudos de Coortes , Feminino , Deficiência de Glucosefosfato Desidrogenase/genética , Humanos , Recém-Nascido , Masculino , Risco , Análise de Sequência de DNA , Fatores de Tempo
5.
Pathology ; 51(3): 274-280, 2019 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-30853107

RESUMO

Genetic defects on 6-pyruvoyl-tetrahydropterin synthase (PTPS) are the most prevalent cause of hyperphenylalaninaemia not due to phenylalanine hydrolyase deficiency (phenylketonuria). PTPS catalyses the second step of tetrahydrobiopterin (BH4) cofactor biosynthesis, and its deficiency represents the most common form of BH4 deficiency. Untreated PTPS deficiency results in depletion of the neurotransmitters dopamine, catecholamine and serotonin causing neurological symptoms. We archived reported missense variants of the PTS gene. Common in silico algorithms were used to predict the effects of such variants, and substantial proportions (up to 19%) of the variants were falsely classified as benign or uncertain. We have determined the crystal structure of the human PTPS hexamer, allowing another level of interpretation to understand the potential deleterious consequences of the variants from a structural perspective. The in silico and structure approaches appear to be complimentary and may provide new insights that are not available from each alone. Information from the protein structure suggested that the variants affecting amino acid residues required for interaction between monomeric subunits of the PTPS hexamer were those misclassified as benign by in silico algorithms. Our findings illustrate the important utility of 3D protein structure in interpretation of variants and also current limitations of in silico prediction algorithms. However, software to analyse mutation in the perspective of 3D protein structure is far less readily available than other in silico prediction tools.


Assuntos
Mutação , Fenilcetonúrias/genética , Fósforo-Oxigênio Liases/deficiência , Fósforo-Oxigênio Liases/genética , Humanos , Fenilcetonúrias/metabolismo , Fósforo-Oxigênio Liases/metabolismo , Conformação Proteica
6.
Arch Dis Child ; 103(10): 927-929, 2018 10.
Artigo em Inglês | MEDLINE | ID: mdl-29472193

RESUMO

OBJECTIVE: To investigate the burden of clinically significant neonatal jaundice (SNJ) in Taiwan, 2000-2010. STUDY DESIGN: The nationwide, population-based health insurance database in Taiwan was used to investigate the incidence, kernicterus rate and mortality rates of SNJ cohort born between 2000 and 2010. RESULTS: From 2000 to 2010, up to 242 546 patients admitted with neonatal jaundice (NJ) were identified. The incidence of SNJ was 5.9% in 2000 and increased to 13.7% in 2010 (P<0.001). The mortality rate significantly decreased from 0.51% in 2000 to 0.26% in 2010 (P<0.001) and the average incidence of kernicterus was 0.86 per 100 000 live births, indicating dramatically decreased rates compared with earlier rates in Taiwan. CONCLUSIONS: In spite of the increased incidence rates, the rates of mortality and kernicterus in patients with NJ significantly declined in Taiwan. The public health prevention programme, clinicians' awareness and effective management might contribute to the reduction of these acute severe sequelae.


Assuntos
Icterícia Neonatal , Kernicterus , Feminino , Hospitalização/estatística & dados numéricos , Humanos , Incidência , Recém-Nascido , Icterícia Neonatal/mortalidade , Icterícia Neonatal/terapia , Kernicterus/epidemiologia , Kernicterus/prevenção & controle , Masculino , Mortalidade , Determinação de Necessidades de Cuidados de Saúde , Taiwan/epidemiologia
7.
PLoS One ; 11(4): e0153407, 2016.
Artigo em Inglês | MEDLINE | ID: mdl-27073996

RESUMO

BACKGROUND: Early detection of critical congenital heart disease (CCHD) can significantly reduce morbidity and mortality among newborns. We investigate the feasibility of implementing a community-based newborn CCHD screening program in Taipei. METHODS: Twelve birthing facilities in Taipei participated in a trial screening program between October 1, 2013, and March 31, 2014. Newborns underwent pulse oximetry at 24-36 h old, with probes attached to the right hand and one lower limb. Any screening saturation ≥95% in either extremity, with an absolute difference of ≤3% between the right hand and foot, was accepted as a screening pass. A screening result was considered as a fail if the oxygen saturation was <95% at either probe site, on 3 separate occasions, each separated by 30 min or the first result was <95% at either probe site, and any subsequent oxygen saturation measurement was <90%. Public health nurses would follow up all missed or refused cases. RESULTS: Of the 6,387 live births, 6,296 newborns (coverage rate: 6,296/6,387 = 98.6%) underwent appropriate pulse oximetry screening. Sixteen newborns (0.25%) were reported to have a failed screening result. Five of these screen positive newborns were confirmed with CCHD; two of them were diagnosed solely attributed to the failed screening results. The false-positive rate was 0.18%. Implementing a 6-month screening program for CCHD produced good case detection rate, while using efficient screening and referral systems. CONCLUSION: This program was successful in integrating screening, referral and public health tracking systems. The protocol outlined in this report could provide a community-based model for worldwide implementation.


Assuntos
Cardiopatias Congênitas/diagnóstico , Triagem Neonatal/métodos , Diagnóstico Precoce , Humanos , Recém-Nascido , Oximetria/métodos , Índice de Gravidade de Doença , Taiwan
8.
Clin Chim Acta ; 453: 13-20, 2016 Jan 30.
Artigo em Inglês | MEDLINE | ID: mdl-26620954

RESUMO

BACKGROUND: Propionyl-CoA carboxylase (PCC) is a mitochondrial enzyme involved in the catabolism of several essential amino acids and odd chain fatty acids. Previous PCC assays have involved either a radiometric assay or have required mitochondria isolation and/or enzyme purification. METHODS: We developed an enzymatic method to analyze PCC activity in phytohemagglutinin (PHA) stimulated lymphocytes that involves high performance liquid chromatography. RESULTS: The method shows good linearity and sensitivity. PCC activity was unaffected even when lymphocytes were isolated and PHA stimulated after a whole blood sample had been stored at 4°C for 5days. This indicates that this method is suitable for analyzing samples from distant medical centers. The PCC activity of patients with propionic acidemia was found to be much lower than that of normal individuals and carriers. However, this PCC assay is significantly affected by the red blood cell contamination. In conclusion, this is a reliable method for performing PCC assays and only requires 0.5 to 1.0ml of whole blood from newborns. CONCLUSIONS: The PCC assay established in this study is useful for the confirmation of PA in individuals, and prenatal diagnosis and genetic counseling for the affected families.


Assuntos
Ensaios Enzimáticos/métodos , Linfócitos/efeitos dos fármacos , Linfócitos/enzimologia , Metilmalonil-CoA Descarboxilase/metabolismo , Fito-Hemaglutininas/farmacologia , Adolescente , Criança , Cromatografia Líquida de Alta Pressão , Estabilidade Enzimática , Feminino , Humanos , Concentração de Íons de Hidrogênio , Limite de Detecção , Modelos Lineares , Masculino , Metilmalonil-CoA Descarboxilase/química
9.
Clin Chim Acta ; 447: 1-7, 2015 Jul 20.
Artigo em Inglês | MEDLINE | ID: mdl-25970129

RESUMO

BACKGROUND: The advancements in laboratory technology and knowledge of the mechanisms behind metabolic disorders have facilitated accurate and reliable laboratory testing in screening, diagnosis and treatment of inherited metabolic disorders. Therefore, quality assurance and improvement in diagnostic proficiency have become essential in this area. In most developing countries, standard practices for quality assurance in testing of enzymes, hormones and metabolites involved in these genetic disorders have not been fully implemented. We highlight the benefits of quality assurance and aim to create awareness for greater compliance with the criteria established for quality control to ensure accuracy in biochemical genetic testing. METHODS: Establishing the limit of detection and testing range for each analyte and enzyme are useful as a reference while setting up new assays. To minimize error, %CV should be monitored regularly. Evaluation of proficiency testing performance provides scope to the laboratory for improving testing quality. RESULTS: Low precision seen in lysosomal enzyme assays does not undermine their diagnostic efficacy as differentiation between patients and normal subjects is possible by setting % coefficient of variation cutoffs. CONCLUSIONS: The study will facilitate the collaboration with other screening and diagnostic systems and help in development of new laboratory standards.


Assuntos
Técnicas de Laboratório Clínico/normas , Doenças Metabólicas/diagnóstico , Doenças Metabólicas/genética , Garantia da Qualidade dos Cuidados de Saúde/métodos , Teste em Amostras de Sangue Seco , Humanos , Recém-Nascido , Limite de Detecção , Lisossomos/enzimologia , Doenças Metabólicas/enzimologia
10.
Biochem Genet ; 52(9-10): 415-29, 2014 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-24863100

RESUMO

Propionyl-CoA carboxylase (PCC) is involved in the catabolism of branched chain amino acids, odd-numbered fatty acids, cholesterol, and other metabolites. PCC consists of two subunits, α and ß, encoded by the PCCA and PCCB genes, respectively. Mutations in the PCCA or PCCB subunit gene may lead to propionic acidemia. In this study, we performed mutation analysis on ten propionic acidemia patients from eight unrelated and nonconsanguineous families in Taiwan. Two PCCA mutations, c.229C→T (p.R77W) and c.1262A→C (p.Q421P), were identified in a PCCA-deficient patient. Six mutations in the PCCB gene, including c.-4156_183+3713del, c.580T→C (p.S194P), c.838dup (p.L280Pfs 11), c.1301C→T (p.A434V), c.1316A→G (P.Y439C), and c.1534C→T (p.R512C), were identified in seven PCCB-deficient families. The c.-4156_183+3713del mutation is the first known large deletion that affects the PCCB gene functions. Furthermore, the c.1301C→T and c.-4156_183+3713del mutations in the PCCB gene have not been reported previously. Clinical features demonstrated that these two frequent mutations are associated with low enzyme activity and a classic propionic acidemia phenotype.


Assuntos
Metilmalonil-CoA Descarboxilase/genética , Mutação , Acidemia Propiônica/enzimologia , Alelos , Feminino , Estudos de Associação Genética , Ligação Genética , Humanos , Lactente , Recém-Nascido , Masculino , Metilmalonil-CoA Descarboxilase/metabolismo , Acidemia Propiônica/genética , Subunidades Proteicas/genética , Subunidades Proteicas/metabolismo , Análise de Sequência de DNA , Taiwan
11.
J Hum Genet ; 59(3): 145-52, 2014 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-24401910

RESUMO

Phenylalanine hydroxylase (PAH) deficiency is responsible for most cases of phenylketonuria (PKU). In this study of the PAH mutation spectrum in the Taiwanese population, 139 alleles were identified including 34 different mutations. The V190G, Q267R and F392I mutations are first reported in this study. The most common mutations, R241C, R408Q and Ex6-96A>G, account for 23.2%, 12.0% and 9.2%, of the mutant alleles, respectively. Haplotype analysis shows that R241C and Ex6-96A>G are exclusively associated with haplotype 4.3 to suggest founder effects. On the other hand, R408Q is found on two distinct haplotypes suggesting recurrent mutations. The spectrum of PAH mutations in Taiwan shows various links to those of other Asian regions, yet remarkable differences exist. Notably, R408Q, E286K and -4173_-407del, accounting for 21% of all mutant alleles in Taiwan, are very rare or are undetected among PKU cohorts of other Asian regions to suggest local founder effects. Moreover, the low homozygosity value of 0.092 hints at a high degree of ethnic heterogeneity within the Taiwanese population. Our study of PAH mutation spectrum and the associated haplotypes is useful for subsequent study on the origin and migration pattern via Taiwan, an island at the historical crossroad of migration of ancient populations.


Assuntos
Etnicidade/genética , Heterogeneidade Genética , Haplótipos/genética , Mutação/genética , Fenilalanina Hidroxilase/genética , Frequência do Gene/genética , Estudos de Associação Genética , Humanos , Taiwan
12.
Int J Pediatr Otorhinolaryngol ; 77(10): 1734-7, 2013 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-24012220

RESUMO

OBJECTIVES: To establish a hearing screening program with high coverage, low referral rate, high follow-up rate, and early intervention in Taipei City. METHODS: From September 2009 to December 2010, 85% delivery units in Taipei City, which includes 20 hospitals and 14 obstetrics clinics, were recruited into the screening program in two stages. A total of 15,930 babies were born in these participating hospitals and clinics during the program period. Among these neonates, 15,790 underwent hearing screening test with automatic auditory brainstem response (AABR). The screening was free of charge to the parents. The hearing screening examination was performed 24-36 h after birth. The same test was repeated between 36 and 60 h of age if the baby failed the first hearing test. The neonate was referred to the diagnostic hospitals for further investigations if he failed the second test. RESULTS: The screening coverage rate was 99.1% (15,790/15,930). The incidence of bilateral moderate to severe and unilateral hearing loss was 1.4 per 1000 (22/15,790) and 1.5 per 1000 (24/15,790), respectively. Four percent (626/15,790) of newborns failed to pass the initial screening test and 1.0% of newborns failed to pass the second screening test. Therefore, 1.0% newborns were referred for diagnostic assessments. The follow-up rate was 94.4% (151/160). Sixty-four percent (14/22) of babies with bilateral hearing loss completed the full diagnostic hearing tests within 3 months of birth. CONCLUSIONS: The universal newborn hearing screening program is an adequate program for Taipei City with high coverage, low referral rate, and good follow-up rate. Screening fees covered by third parties, two-stage screening steps with AABR strategy, and the stringent monitoring system proved to be effective. LEVEL OF EVIDENCE: 2b, individual cohort study.


Assuntos
Transtornos da Audição/congênito , Transtornos da Audição/epidemiologia , Triagem Neonatal/organização & administração , Surdez/diagnóstico , Surdez/epidemiologia , Países em Desenvolvimento , Feminino , Transtornos da Audição/diagnóstico , Perda Auditiva Bilateral/congênito , Perda Auditiva Bilateral/diagnóstico , Perda Auditiva Bilateral/epidemiologia , Perda Auditiva Neurossensorial/congênito , Perda Auditiva Neurossensorial/diagnóstico , Perda Auditiva Neurossensorial/epidemiologia , Perda Auditiva Unilateral/congênito , Perda Auditiva Unilateral/diagnóstico , Perda Auditiva Unilateral/epidemiologia , Testes Auditivos/métodos , Testes Auditivos/estatística & dados numéricos , Humanos , Recém-Nascido , Masculino , Programas de Rastreamento/organização & administração , Prevalência , Desenvolvimento de Programas , Avaliação de Programas e Projetos de Saúde , Taiwan/epidemiologia
13.
PLoS One ; 7(4): e32940, 2012.
Artigo em Inglês | MEDLINE | ID: mdl-22509252

RESUMO

Recently, the genomes of two Mycoplasma fermentans strains, namely M64 and JER, have been completely sequenced. Gross comparison indicated that the genome of M64 is significantly bigger than the other strain and the difference is mainly contributed by the repetitive sequences including seven families of simple and complex transposable elements ranging from 973 to 23,778 bps. Analysis of these repeats resulted in the identification of a new distinct family of Integrative Conjugal Elements of M. fermentans, designated as ICEF-III. Using the concept of "reaction connectivity", the metabolic capabilities in M. fermentans manifested by the complete and partial connected biomodules were revealed. A comparison of the reported M. pulmonis, M. arthritidis, M. genitalium, B. subtilis, and E. coli essential genes and the genes predicted from the M64 genome indicated that more than 73% of the Mycoplasmas essential genes are preserved in M. fermentans. Further examination of the highly and partly connected reactions by a novel combinatorial phylogenetic tree, metabolic network, and essential gene analysis indicated that some of the pathways (e.g. purine and pyrimidine metabolisms) with partial connected reactions may be important for the conversions of intermediate metabolites. Taken together, in light of systems and network analyses, the diversity among the Mycoplasma species was manifested on the variations of their limited metabolic abilities during evolution.


Assuntos
Biodiversidade , Genoma Bacteriano/genética , Mycoplasma fermentans/genética , Mycoplasma fermentans/metabolismo , Sequência de Bases , Sequência Conservada , Elementos de DNA Transponíveis/genética , DNA Bacteriano/genética , Evolução Molecular , Genes Bacterianos/genética , Redes e Vias Metabólicas/genética , Dados de Sequência Molecular , Filogenia , Especificidade da Espécie
14.
PLoS One ; 7(4): e35304, 2012.
Artigo em Inglês | MEDLINE | ID: mdl-22536369

RESUMO

Mycoplasma fermentans is a potent human pathogen which has been implicated in several diseases. Notably, its lipid-associated membrane proteins (LAMPs) play a role in immunomodulation and development of infection-associated inflammatory diseases. However, the systematic protein identification of pathogenic M. fermentans has not been reported. From our recent sequencing results of M. fermentans M64 isolated from human respiratory tract, its genome is around 1.1 Mb and encodes 1050 predicted protein-coding genes. In the present study, soluble proteome of M. fermentans was resolved and analyzed using two-dimensional gel electrophoresis. In addition, Triton X-114 extraction was carried out to enrich amphiphilic proteins including putative lipoproteins and membrane proteins. Subsequent mass spectrometric analyses of these proteins had identified a total of 181 M. fermentans ORFs. Further bioinformatics analysis of these ORFs encoding proteins with known or so far unknown orthologues among bacteria revealed that a total of 131 proteins are homologous to known proteins, 11 proteins are conserved hypothetical proteins, and the remaining 39 proteins are likely M. fermentans-specific proteins. Moreover, Triton X-114-enriched fraction was shown to activate NF-kB activity of raw264.7 macrophage and a total of 21 lipoproteins with predicted signal peptide were identified therefrom. Together, our work provides the first proteome reference map of M. fermentans as well as several putative virulence-associated proteins as diagnostic markers or vaccine candidates for further functional study of this human pathogen.


Assuntos
Proteínas de Bactérias/metabolismo , Proteínas Ligadas a Lipídeos/metabolismo , Mycoplasma fermentans/metabolismo , Proteoma/metabolismo , Fatores de Virulência/metabolismo , Sequência de Aminoácidos , Animais , Proteínas de Bactérias/genética , Proteínas de Bactérias/imunologia , Linhagem Celular , Eletroforese em Gel Bidimensional , Genoma Bacteriano , Glicólise/genética , Humanos , Proteínas Ligadas a Lipídeos/genética , Proteínas Ligadas a Lipídeos/imunologia , Macrófagos/imunologia , Macrófagos/metabolismo , Camundongos , Anotação de Sequência Molecular , Dados de Sequência Molecular , Mycoplasma fermentans/genética , NF-kappa B/metabolismo , Fases de Leitura Aberta , Filogenia , Estrutura Secundária de Proteína , Proteoma/genética , Proteoma/imunologia , Proteômica , Homologia de Sequência de Aminoácidos , Fatores de Virulência/genética , Fatores de Virulência/imunologia
15.
J Hum Genet ; 57(2): 145-52, 2012 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-22237589

RESUMO

The enzyme 6-pyruvoyl-tetrahydropterin synthase (PTPS, gene symbol: PTS) is involved in the second step of the de novo biosynthesis of tetrahydrobiopterin (BH4), which is a vital cofactor of nitric oxide synthases and three types of aromatic amino acid hydroxylases; the latter are important enzymes in the production of neurotransmitters. We conducted a study of PTS mutations in East Asia, including Taiwan, Mainland China, Japan, South Korea, the Philippines, Thailand and Malaysia. A total of 43 mutations were identified, comprising 22 previously reported mutations and 21 new discovered mutations. Among these, the c.155A>G, c.259C>T, c. 272A>G, c.286G>A and c.84-291A>G mutations were the most common PTS mutations in East Asia, while the c.58T>C and c.243G>A mutations were, respectively, specific to Filipinos and Japanese originating from Okinawa. Further studies demonstrated that each of the mutations listed above was in linkage disequilibrium to a specific allele of polymorphic microsatellite marker, D11S1347. These results suggest the presence of founder effects that have affected these frequent mutations in East Asia populations. In this context, D11S1347 should become one of the most reliable polymorphic markers for use in prenatal diagnosis among PTPS deficient families, especially where mutations are yet to be identified.


Assuntos
Povo Asiático , Análise Mutacional de DNA , Efeito Fundador , Fósforo-Oxigênio Liases/genética , Processamento Alternativo , Sequência de Bases , Ásia Oriental , Frequência do Gene , Haplótipos , Humanos , Desequilíbrio de Ligação , Repetições de Microssatélites , Dados de Sequência Molecular , Mutação de Sentido Incorreto , Fósforo-Oxigênio Liases/deficiência , Mutação Puntual , Diagnóstico Pré-Natal
16.
JIMD Rep ; 6: 55-64, 2012.
Artigo em Inglês | MEDLINE | ID: mdl-23430940

RESUMO

The mut-type methylmalonic aciduria (MMA, MIM 251000) is caused by a deficiency of mitochondrial methylmalonyl-CoA mutase (MCM, E.C. 5.4.99.2) activity, which results from defects in the MUT gene. To elucidate the mutation spectrum of the MUT gene in Chinese MMA patients, 13 exons of the MUT gene, including untranslated regions, were analyzed by PCR-based sequencing for 42 unrelated Chinese MMA patients. All the 42 patients were found to have at least one MUT mutation. A total of 41 mutations were identified. Of these mutations, 20 were novel ones, including one nonsense mutation (c.103C>T), 12 missense mutations (c.316A>C, c.424A>G, c.494A>G, c.554C>T, c.599T>C, c.919T>C, c.1009T>C, c.1061C>T, c.1141G>A, c.1208G>A, c.1267G>A, and c.1295A>C), one duplication (c.755dupA), three small deletions (c.398_399delGA, c.1046_1058del, and c.1835delG), two mutations that might affect mRNA splicing (c.754-1G>A and c.1084-10A>G), and one major deletion. Among the mutations identified, the c.1280G>A (15.5%), c.729_730insTT (10.7%), c.1106G>A (4.8%), c.1630_1631GG>TA (4.8%), and c.2080C>T (4.8%) accounted for 40% of the diseased alleles. The c.1280G>A and c.729_730insTT mutations were found to be the most frequent mutations in Southern and Northern Chinese, respectively. The results of microsatellite analysis suggest that the spread of c.729_730insTT among the Northern Chinese and of c.1280G>A and c.1630_1631GG>TA among the Southern Chinese may have undergone founder effects. This mutation analysis of the gene responsible for mut-type MMA will help to provide a molecular diagnostic aid for differential diagnosis of MMA and could be applied for carrier detection and prenatal diagnosis among Chinese family at risk of mut-type MMA.

17.
J Bacteriol ; 193(16): 4302-3, 2011 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-21642450

RESUMO

Mycoplasma fermentans is a microorganism commonly found in the genitourinary and respiratory tracts of healthy individuals and AIDS patients. The complete genome of the repetitive-sequence-rich M. fermentans strain M64 is reported here. Comparative genomics analysis revealed dramatic differences in genome size between this strain and the recently completely sequenced JER strain.


Assuntos
Mycoplasma fermentans/classificação , Mycoplasma fermentans/genética , Genoma Bacteriano , Dados de Sequência Molecular
18.
Clin Chim Acta ; 412(5-6): 460-5, 2011 Feb 20.
Artigo em Inglês | MEDLINE | ID: mdl-21134364

RESUMO

BACKGROUND: Citrin, encoded by SLC25A13 gene, is a mitochondrial solute transporter with a crucial role in urea, nucleotide and protein synthesis. SLC25A13 mutations cause two phenotypes, adult-onset type II citrullinemia and neonatal intrahepatic cholestasis caused by citrin deficiency (NICCD). This study aimed to develop a high resolution melting (HRM) analysis for SLC25A13 mutation scanning and determine the carrier rate in Taiwan. METHODS: DNAs from healthy subjects (n=479), and patients with hepatocellular carcinoma (HCC, n=100) and NICCD (n=5) were scanned in exons 6, 9, 11, 16, and 17 and parts of introns of SLC25A13 using HRM analysis. All mutations detected by HRM analysis were further confirmed by TaqMan method and/or direct sequencing. RESULTS: In healthy subjects, seventeen carriers with mutants c.851_854del (n=10), c.1638_1660dup, c.615+5G>A (n=4), and two novel mutants, c.475C>T and c.1658G>A, were detected. The frequency of carriers was about 1/28. In patients with HCC, there were only 2 carriers with c.851_854del mutant. Patients with NICCD (n=5) diagnosed during 2007 and 2008, harbored compound heterozygous mutations c.851_854del/c.1177+1G>A, c.851_854del/c.1638_1660dup (n=2), c.851_854del/c.615+5G>A, and c.1638_1660dup/c.615+5G>A. CONCLUSIONS: HRM analysis is a simple, rapid and robust method for detecting SLC25A13 mutations in clinical laboratories. SLC25A13 mutations may not be a major contributor to the pathogenesis of HCC in Taiwan.


Assuntos
Carcinoma Hepatocelular/genética , Neoplasias Hepáticas/genética , Proteínas de Transporte da Membrana Mitocondrial/genética , Mutação/genética , Temperatura de Transição , Carcinoma Hepatocelular/diagnóstico , Colestase Intra-Hepática/diagnóstico , Colestase Intra-Hepática/genética , Genótipo , Humanos , Neoplasias Hepáticas/diagnóstico , Desnaturação de Ácido Nucleico , Reação em Cadeia da Polimerase , Taiwan
19.
J Chin Med Assoc ; 73(6): 314-8, 2010 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-20603089

RESUMO

BACKGROUND: The clinical course of methylmalonic aciduria (MMA) is fulminant in neonates and emergency management is necessary to save lives. It is therefore very important to differentiate affected from unaffected neonates immediately when there are abnormal results regarding MMA in newborn screening. METHODS: Between January 2002 and December 2008, 598,522 newborns were screened for MMA by 2 neonatal screening centers: the Chinese Foundation of Health and the Taipei Institute of Pathology. A total of 22 newborns were referred to confirmatory medical centers, and 7 were confirmed as having MMA. The initial propionylcarnitine (C3) level, C3/acetylcarnitine (C2) ratio, plasma ammonia, liver function tests, blood pH and bicarbonate were compared between the true-positive and false-positive groups. RESULTS: The C3/C2 ratio and plasma ammonia were markedly higher in the true-positive MMA group (p < 0.0001). Blood gas pH (p = 0.029), bicarbonate (p = 0.019), and aspartate aminotransferase (p = 0.005) also significantly differed between these 2 groups. CONCLUSION: Referred newborns with elevated plasma C3/C2 ratios > 0.4 or ammonia levels > 200 mg/dL should be highly suspected of having MMA.


Assuntos
Ácido Metilmalônico/urina , Triagem Neonatal/métodos , Espectrometria de Massas em Tandem/métodos , Acetilcarnitina/sangue , Amônia/sangue , Carnitina/análogos & derivados , Carnitina/sangue , Humanos , Recém-Nascido , Taiwan
20.
J Hum Genet ; 55(9): 621-6, 2010 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-20631720

RESUMO

The cblC type of combined methylmalonic aciduria (MMA) and homocystinuria (HC) is the most common inborn error of vitamin B(12) metabolism and is caused by mutations in the MMACHC gene. To elucidate the spectrum of mutations that causes combined MMA and HC in Chinese patients, the MMACHC gene was sequenced in 79 unrelated Chinese patients. Sequence analysis identified 98.1% of disease alleles and found that all patients had at least one MMACHC mutation. A total of 24 mutations were identified. Out of the 24 mutations identified, 9 were novel ones, including missense mutations (c.365A>T and c.452A>G), nonsense mutations (c.315C>G and c.615C>A), deletions (c.99delA and c.277-3_c.303del30), duplications (c.248dupT and c.626dupT) and an insertion (c.445_446insA). The c.609G>A, c.658_660delAAG, c.482G>A, c.394C>T and c.80A>G mutations were the most common mutations and accounted for 80% of disease alleles. Haplotype analysis suggests that the spread of the c.80A>G, c.609G>A and c.658_660delAAG mutations in Chinese patients were caused by a founder effect. The results indicate that defects occurring in the MMACHC gene are the major cause of this disease in Chinese patients with combined MMA and HC, and direct mutation analysis can therefore be used as a rapid confirmatory diagnosis among these Chinese patients.


Assuntos
Proteínas de Transporte/genética , Análise Mutacional de DNA , Alelos , Erros Inatos do Metabolismo dos Aminoácidos/genética , Pré-Escolar , China , Códon sem Sentido , Etnicidade , Feminino , Efeito Fundador , Haplótipos , Homocistinúria/genética , Humanos , Lactente , Masculino , Repetições de Microssatélites , Mutação de Sentido Incorreto , Oxirredutases , Deficiência de Vitamina B 12/congênito
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